IL_4V6I_097
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- CUGAUG*CGGAUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6I_097 not in the Motif Atlas
- Geometric match to IL_5TBW_026
- Geometric discrepancy: 0.3952
- The information below is about IL_5TBW_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_82488.1
- Basepair signature
- cWW-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V6I|1|DA|C|758
4V6I|1|DA|U|759
4V6I|1|DA|G|760
4V6I|1|DA|A|761
4V6I|1|DA|U|762
4V6I|1|DA|G|763
*
4V6I|1|DA|C|768
4V6I|1|DA|G|769
4V6I|1|DA|G|770
4V6I|1|DA|A|771
4V6I|1|DA|U|772
4V6I|1|DA|G|773
Current chains
- Chain DA
- 25S rRNA
Nearby chains
- Chain BL
- 60S ribosomal protein rpL13 (L13e)
- Chain BO
- 60S ribosomal protein rpL28 (L15p)
- Chain Br
- 60S ribosomal protein rpL42 (L44e)
Coloring options: