IL_4V6I_102
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- GGUU*AUC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6I_102 not in the Motif Atlas
- Homologous match to IL_8P9A_259
- Geometric discrepancy: 0.1508
- The information below is about IL_8P9A_259
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_36931.2
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 24
Unit IDs
4V6I|1|DA|G|869
4V6I|1|DA|G|870
4V6I|1|DA|U|871
4V6I|1|DA|U|872
*
4V6I|1|DA|A|888
4V6I|1|DA|U|889
4V6I|1|DA|C|890
Current chains
- Chain DA
- 25S rRNA
Nearby chains
- Chain BC
- 60S ribosomal protein rpL3 (L3p)
- Chain Bl
- 60S ribosomal protein rpL37 (L37e)
Coloring options: