IL_4V6I_110

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GAGGUAAA*UAAAUAUGU

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6I|1|DA|G|991
4V6I|1|DA|A|992
4V6I|1|DA|G|993
4V6I|1|DA|G|994
4V6I|1|DA|U|995
4V6I|1|DA|A|996
4V6I|1|DA|A|997
4V6I|1|DA|A|998
*
4V6I|1|DA|U|1052
4V6I|1|DA|A|1053
4V6I|1|DA|A|1054
4V6I|1|DA|A|1055
4V6I|1|DA|U|1056
4V6I|1|DA|A|1057
4V6I|1|DA|U|1058
4V6I|1|DA|G|1059
4V6I|1|DA|U|1060

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BI

60S ribosomal protein rpL10 (L10e)

Chain BQ

60S ribosomal protein rpL5 (L18p)

Chain BU

60S ribosomal protein rpL21 (L21e)

Chain Be

60S ribosomal protein rpL7 (L30p)

Chain DC

5S ribosomal RNA; 5S rRNA