IL_4V6I_111

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GCG*UU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_111 not in the Motif Atlas

Geometric match to IL_5TBW_375

Geometric discrepancy: 0.2233

The information below is about IL_5TBW_375

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

4V6I|1|DA|G|999
4V6I|1|DA|C|1000
4V6I|1|DA|G|1001
*
4V6I|1|DA|U|1050
4V6I|1|DA|U|1051

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BI

60S ribosomal protein rpL10 (L10e)

Chain BQ

60S ribosomal protein rpL5 (L18p)

Chain BU

60S ribosomal protein rpL21 (L21e)

Chain DC

5S ribosomal RNA; 5S rRNA