IL_4V6I_112
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- GAAUGAUUAG*UCUCAAACU
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V6I|1|DA|G|1001
4V6I|1|DA|A|1002
4V6I|1|DA|A|1003
4V6I|1|DA|U|1004
4V6I|1|DA|G|1005
4V6I|1|DA|A|1006
4V6I|1|DA|U|1007
4V6I|1|DA|U|1008
4V6I|1|DA|A|1009
4V6I|1|DA|G|1010
*
4V6I|1|DA|U|1042
4V6I|1|DA|C|1043
4V6I|1|DA|U|1044
4V6I|1|DA|C|1045
4V6I|1|DA|A|1046
4V6I|1|DA|A|1047
4V6I|1|DA|A|1048
4V6I|1|DA|C|1049
4V6I|1|DA|U|1050
Current chains
- Chain DA
- 25S rRNA
Nearby chains
- Chain BI
- 60S ribosomal protein rpL10 (L10e)
- Chain BQ
- 60S ribosomal protein rpL5 (L18p)
- Chain BU
- 60S ribosomal protein rpL21 (L21e)
- Chain CB
- Transfer RNA; tRNA
- Chain DC
- 5S ribosomal RNA; 5S rRNA
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