IL_4V6I_113

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GAGG*UAUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_113 not in the Motif Atlas

Geometric match to IL_4ZNP_002

Geometric discrepancy: 0.3055

The information below is about IL_4ZNP_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

4V6I|1|DA|G|1010
4V6I|1|DA|A|1011
4V6I|1|DA|G|1012
4V6I|1|DA|G|1013
*
4V6I|1|DA|U|1039
4V6I|1|DA|A|1040
4V6I|1|DA|U|1041
4V6I|1|DA|U|1042

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BQ

60S ribosomal protein rpL5 (L18p)