IL_4V6I_120

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

AUA*UU

Length

5 nucleotides

Bulged bases

4V6I|1|DA|U|1181

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_120 not in the Motif Atlas

Homologous match to IL_8C3A_053

Geometric discrepancy: 0.2934

The information below is about IL_8C3A_053

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

4V6I|1|DA|A|1180
4V6I|1|DA|U|1181
4V6I|1|DA|A|1182
*
4V6I|1|DA|U|1324
4V6I|1|DA|U|1325

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BK

60S ribosomal protein rpL16 (L13p)

Chain BN

60S ribosomal protein rpL14 (L14e)

Chain BS

60S ribosomal protein rpL20 (L18ae)

Chain Be

60S ribosomal protein rpL7 (L30p)

Chain Bj

60S ribosomal protein rpL33 (L35ae)