IL_4V6I_121
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- CUCAUCAGACACCACAAAAG*CUGAAAAUGGAUGGCGCUCAAG
- Length
- 42 nucleotides
- Bulged bases
- 4V6I|1|DA|A|1195, 4V6I|1|DA|C|1199, 4V6I|1|DA|A|1200, 4V6I|1|DA|A|1302, 4V6I|1|DA|U|1305, 4V6I|1|DA|C|1316
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V6I|1|DA|C|1187
4V6I|1|DA|U|1188
4V6I|1|DA|C|1189
4V6I|1|DA|A|1190
4V6I|1|DA|U|1191
4V6I|1|DA|C|1192
4V6I|1|DA|A|1193
4V6I|1|DA|G|1194
4V6I|1|DA|A|1195
4V6I|1|DA|C|1196
4V6I|1|DA|A|1197
4V6I|1|DA|C|1198
4V6I|1|DA|C|1199
4V6I|1|DA|A|1200
4V6I|1|DA|C|1201
4V6I|1|DA|A|1202
4V6I|1|DA|A|1203
4V6I|1|DA|A|1204
4V6I|1|DA|A|1205
4V6I|1|DA|G|1206
*
4V6I|1|DA|C|1298
4V6I|1|DA|U|1299
4V6I|1|DA|G|1300
4V6I|1|DA|A|1301
4V6I|1|DA|A|1302
4V6I|1|DA|A|1303
4V6I|1|DA|A|1304
4V6I|1|DA|U|1305
4V6I|1|DA|G|1306
4V6I|1|DA|G|1307
4V6I|1|DA|A|1308
4V6I|1|DA|U|1309
4V6I|1|DA|G|1310
4V6I|1|DA|G|1311
4V6I|1|DA|C|1312
4V6I|1|DA|G|1313
4V6I|1|DA|C|1314
4V6I|1|DA|U|1315
4V6I|1|DA|C|1316
4V6I|1|DA|A|1317
4V6I|1|DA|A|1318
4V6I|1|DA|G|1319
Current chains
- Chain DA
- 25S rRNA
Nearby chains
- Chain BC
- 60S ribosomal protein rpL3 (L3p)
- Chain BF
- 60S ribosomal protein rpL9 (L6p)
- Chain BI
- 60S ribosomal protein rpL10 (L10e)
- Chain BK
- 60S ribosomal protein rpL16 (L13p)
- Chain BN
- 60S ribosomal protein rpL14 (L14e)
- Chain BS
- 60S ribosomal protein rpL20 (L18ae)
- Chain Bd
- 60S ribosomal protein rpL29 (L29e)
- Chain Be
- 60S ribosomal protein rpL7 (L30p)
- Chain DC
- 5S ribosomal RNA; 5S rRNA
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