IL_4V6I_129

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

CAG*UCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_129 not in the Motif Atlas

Geometric match to IL_4KNQ_003

Geometric discrepancy: 0.1587

The information below is about IL_4KNQ_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V6I|1|DA|C|1397
4V6I|1|DA|A|1399
4V6I|1|DA|G|1400
*
4V6I|1|DA|U|1410
4V6I|1|DA|C|1411
4V6I|1|DA|G|1412

Current chains

Chain DA

25S rRNA

Nearby chains

Chain Bh

60S ribosomal protein pL32 (L32e)

Chain DB

5.8S ribosomal RNA; 5.8S rRNA