IL_4V6I_135

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GAUUCUU*GGAAUAGUUU

Length

17 nucleotides

Bulged bases

4V6I|1|DA|U|1629, 4V6I|1|DA|A|1814

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6I|1|DA|G|1624
4V6I|1|DA|A|1625
4V6I|1|DA|U|1626
4V6I|1|DA|U|1627
4V6I|1|DA|C|1628
4V6I|1|DA|U|1629
4V6I|1|DA|U|1630
*
4V6I|1|DA|G|1811
4V6I|1|DA|G|1812
4V6I|1|DA|A|1813
4V6I|1|DA|A|1814
4V6I|1|DA|U|1815
4V6I|1|DA|A|1816
4V6I|1|DA|G|1817
4V6I|1|DA|U|1818
4V6I|1|DA|U|1819
4V6I|1|DA|U|1820

Current chains

Chain DA

25S rRNA

Nearby chains

Chain Ba

60S ribosomal protein rpL27 (L27e)

Chain Bi

60S ribosomal protein rpL34 (L34e)

Chain Bn

60S ribosomal protein rpL38 (L38e)