IL_4V6I_137

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GGC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_137 not in the Motif Atlas

Geometric match to IL_5ZTM_001

Geometric discrepancy: 0.2634

The information below is about IL_5ZTM_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

4V6I|1|DA|G|1661
4V6I|1|DA|G|1662
4V6I|1|DA|C|1663
*
4V6I|1|DA|G|1786
4V6I|1|DA|A|1787
4V6I|1|DA|C|1788

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BT

60S ribosomal protein rpL19 (L19e)

Chain Ba

60S ribosomal protein rpL27 (L27e)

Chain Bm

60S ribosomal protein rpL43 (L37ae)