IL_4V6I_139

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

UAAC*GAAGA

Length

9 nucleotides

Bulged bases

4V6I|1|DA|G|1751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_139 not in the Motif Atlas

Geometric match to IL_7RQB_046

Geometric discrepancy: 0.1915

The information below is about IL_7RQB_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.2

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4V6I|1|DA|U|1695
4V6I|1|DA|A|1696
4V6I|1|DA|A|1697
4V6I|1|DA|C|1698
*
4V6I|1|DA|G|1748
4V6I|1|DA|A|1749
4V6I|1|DA|A|1750
4V6I|1|DA|G|1751
4V6I|1|DA|A|1752

Current chains

Chain DA

25S rRNA

Nearby chains

Chain Ba

60S ribosomal protein rpL27 (L27e)

Chain Bn

60S ribosomal protein rpL38 (L38e)

Chain Bp

60S ribosomal protein rpL40 (L40e)