IL_4V6I_140

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

CAGCUUAUCA*UUAUGGCUGG

Length

20 nucleotides

Bulged bases

4V6I|1|DA|G|1743

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6I|1|DA|C|1698
4V6I|1|DA|A|1699
4V6I|1|DA|G|1700
4V6I|1|DA|C|1701
4V6I|1|DA|U|1702
4V6I|1|DA|U|1703
4V6I|1|DA|A|1704
4V6I|1|DA|U|1705
4V6I|1|DA|C|1706
4V6I|1|DA|A|1707
*
4V6I|1|DA|U|1739
4V6I|1|DA|U|1740
4V6I|1|DA|A|1741
4V6I|1|DA|U|1742
4V6I|1|DA|G|1743
4V6I|1|DA|G|1744
4V6I|1|DA|C|1745
4V6I|1|DA|U|1746
4V6I|1|DA|G|1747
4V6I|1|DA|G|1748

Current chains

Chain DA

25S rRNA

Nearby chains

Chain Ba

60S ribosomal protein rpL27 (L27e)

Chain Bn

60S ribosomal protein rpL38 (L38e)

Chain Bp

60S ribosomal protein rpL40 (L40e)