IL_4V6I_142

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

CGGAAUUG*CGGAGAUGGG

Length

18 nucleotides

Bulged bases

4V6I|1|DA|A|1729

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6I|1|DA|C|1711
4V6I|1|DA|G|1712
4V6I|1|DA|G|1713
4V6I|1|DA|A|1714
4V6I|1|DA|A|1715
4V6I|1|DA|U|1716
4V6I|1|DA|U|1717
4V6I|1|DA|G|1718
*
4V6I|1|DA|C|1726
4V6I|1|DA|G|1727
4V6I|1|DA|G|1728
4V6I|1|DA|A|1729
4V6I|1|DA|G|1730
4V6I|1|DA|A|1731
4V6I|1|DA|U|1732
4V6I|1|DA|G|1733
4V6I|1|DA|G|1734
4V6I|1|DA|G|1735

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BT

60S ribosomal protein rpL19 (L19e)

Chain Ba

60S ribosomal protein rpL27 (L27e)

Chain Bf

60S ribosomal protein rpL30 (L30e)

Chain Bi

60S ribosomal protein rpL34 (L34e)

Chain Bm

60S ribosomal protein rpL43 (L37ae)