IL_4V6I_155

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

CUG*CGAG

Length

7 nucleotides

Bulged bases

4V6I|1|DA|A|2324

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_155 not in the Motif Atlas

Geometric match to IL_5M0H_001

Geometric discrepancy: 0.221

The information below is about IL_5M0H_001

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V6I|1|DA|C|2128
4V6I|1|DA|U|2129
4V6I|1|DA|G|2130
*
4V6I|1|DA|C|2322
4V6I|1|DA|G|2323
4V6I|1|DA|A|2324
4V6I|1|DA|G|2325

Current chains

Chain DA

25S rRNA

Nearby chains

Chain Ac

Unknown 40S ribosomal protein XS2

Chain Bm

60S ribosomal protein rpL43 (L37ae)