IL_4V6I_156
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- CGAUGGU*AUGUUGACG
- Length
- 16 nucleotides
- Bulged bases
- 4V6I|1|DA|U|2159, 4V6I|1|DA|U|2175, 4V6I|1|DA|C|2179
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6I_156 not in the Motif Atlas
- Geometric match to IL_7RQB_070
- Geometric discrepancy: 0.2682
- The information below is about IL_7RQB_070
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_17069.3
- Basepair signature
- cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V6I|1|DA|C|2156
4V6I|1|DA|G|2157
4V6I|1|DA|A|2158
4V6I|1|DA|U|2159
4V6I|1|DA|G|2160
4V6I|1|DA|G|2161
4V6I|1|DA|U|2162
*
4V6I|1|DA|A|2172
4V6I|1|DA|U|2173
4V6I|1|DA|G|2174
4V6I|1|DA|U|2175
4V6I|1|DA|U|2176
4V6I|1|DA|G|2177
4V6I|1|DA|A|2178
4V6I|1|DA|C|2179
4V6I|1|DA|G|2180
Current chains
- Chain DA
- 25S rRNA
Nearby chains
- Chain BB
- 60S ribosomal protein rpL2 (L2p)
- Chain Bm
- 60S ribosomal protein rpL43 (L37ae)
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: