IL_4V6I_165

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

4V6I|1|DA|A|2397, 4V6I|1|DA|A|2982

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_165 not in the Motif Atlas

Homologous match to IL_5TBW_092

Geometric discrepancy: 0.452

The information below is about IL_5TBW_092

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V6I|1|DA|G|2396
4V6I|1|DA|A|2397
4V6I|1|DA|A|2398
*
4V6I|1|DA|U|2981
4V6I|1|DA|A|2982
4V6I|1|DA|C|2983
4V6I|1|DA|C|2984

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BC

60S ribosomal protein rpL3 (L3p)

Chain BV

60S ribosomal protein rpL17 (L22p)