IL_4V6I_168

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

4V6I|1|DA|G|2606

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_168 not in the Motif Atlas

Homologous match to IL_5TBW_095

Geometric discrepancy: 0.2509

The information below is about IL_5TBW_095

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

4V6I|1|DA|U|2423
4V6I|1|DA|A|2424
4V6I|1|DA|G|2425
*
4V6I|1|DA|U|2604
4V6I|1|DA|G|2605
4V6I|1|DA|G|2606
4V6I|1|DA|G|2607

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BB

60S ribosomal protein rpL2 (L2p)

Chain BP

60S ribosomal protein rpL15 (L15e)

Chain Br

60S ribosomal protein rpL42 (L44e)