IL_4V6I_170

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GGUGUAGAAUAA*UAC

Length

15 nucleotides

Bulged bases

4V6I|1|DA|U|2453, 4V6I|1|DA|G|2454, 4V6I|1|DA|U|2460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6I|1|DA|G|2451
4V6I|1|DA|G|2452
4V6I|1|DA|U|2453
4V6I|1|DA|G|2454
4V6I|1|DA|U|2455
4V6I|1|DA|A|2456
4V6I|1|DA|G|2457
4V6I|1|DA|A|2458
4V6I|1|DA|A|2459
4V6I|1|DA|U|2460
4V6I|1|DA|A|2461
4V6I|1|DA|A|2462
*
4V6I|1|DA|U|2493
4V6I|1|DA|A|2494
4V6I|1|DA|C|2495

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BA

60S ribosomal protein rpL1 (L1p)

Chain Bk

60S ribosomal protein rpL36 (L36e)