IL_4V6I_171

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GGAG*CGCCAGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6I|1|DA|G|2466
4V6I|1|DA|G|2467
4V6I|1|DA|A|2468
4V6I|1|DA|G|2469
*
4V6I|1|DA|C|2476
4V6I|1|DA|G|2477
4V6I|1|DA|C|2478
4V6I|1|DA|C|2479
4V6I|1|DA|A|2480
4V6I|1|DA|G|2481
4V6I|1|DA|U|2482
4V6I|1|DA|G|2483
4V6I|1|DA|A|2484
4V6I|1|DA|A|2485
4V6I|1|DA|A|2486
4V6I|1|DA|U|2487
4V6I|1|DA|A|2488
4V6I|1|DA|C|2489

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BA

60S ribosomal protein rpL1 (L1p)