IL_4V6I_181

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

4V6I|1|DA|G|2945, 4V6I|1|DA|A|2946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_181 not in the Motif Atlas

Geometric match to IL_4V9F_087

Geometric discrepancy: 0.2109

The information below is about IL_4V9F_087

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4V6I|1|DA|C|2879
4V6I|1|DA|U|2880
4V6I|1|DA|C|2881
*
4V6I|1|DA|G|2943
4V6I|1|DA|U|2944
4V6I|1|DA|G|2945
4V6I|1|DA|A|2946
4V6I|1|DA|G|2947

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BC

60S ribosomal protein rpL3 (L3p)

Chain BM

60S ribosomal protein rpL23 (L14p)