IL_4V6I_184

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

UA*UAAG

Length

6 nucleotides

Bulged bases

4V6I|1|DA|A|2911

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_184 not in the Motif Atlas

Homologous match to IL_5TBW_111

Geometric discrepancy: 0.2721

The information below is about IL_5TBW_111

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

4V6I|1|DA|U|2891
4V6I|1|DA|A|2892
*
4V6I|1|DA|U|2909
4V6I|1|DA|A|2910
4V6I|1|DA|A|2911
4V6I|1|DA|G|2912

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BK

60S ribosomal protein rpL16 (L13p)

Chain Bd

60S ribosomal protein rpL29 (L29e)