IL_4V6I_192

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GCG*CAUUGC

Length

9 nucleotides

Bulged bases

4V6I|1|DA|G|3080

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_192 not in the Motif Atlas

Geometric match to IL_5VSU_002

Geometric discrepancy: 0.2894

The information below is about IL_5VSU_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73028.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V6I|1|DA|G|3062
4V6I|1|DA|C|3063
4V6I|1|DA|G|3065
*
4V6I|1|DA|C|3076
4V6I|1|DA|A|3077
4V6I|1|DA|U|3078
4V6I|1|DA|U|3079
4V6I|1|DA|G|3080
4V6I|1|DA|C|3081

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BT

60S ribosomal protein rpL19 (L19e)

Chain Bg

60S ribosomal protein rpL31 (L31e)