IL_4V6I_195

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

CCAU*GGCUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6I|1|DA|C|3211
4V6I|1|DA|C|3212
4V6I|1|DA|A|3213
4V6I|1|DA|U|3214
*
4V6I|1|DA|G|3219
4V6I|1|DA|G|3220
4V6I|1|DA|C|3221
4V6I|1|DA|U|3222
4V6I|1|DA|A|3223
4V6I|1|DA|G|3224

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BG

60S ribosomal protein rpL6 (L6e)

Chain BN

60S ribosomal protein rpL14 (L14e)