IL_4V6I_201

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

UGUAAG*CUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_201 not in the Motif Atlas

Geometric match to IL_4WF9_108

Geometric discrepancy: 0.3514

The information below is about IL_4WF9_108

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V6I|1|DA|U|3332
4V6I|1|DA|G|3333
4V6I|1|DA|U|3334
4V6I|1|DA|A|3335
4V6I|1|DA|A|3336
4V6I|1|DA|G|3337
*
4V6I|1|DA|C|3367
4V6I|1|DA|U|3368
4V6I|1|DA|G|3369
4V6I|1|DA|A|3370
4V6I|1|DA|G|3371

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BC

60S ribosomal protein rpL3 (L3p)

Chain BZ

60S ribosomal protein rpL24 (L24e)