IL_4V6I_203
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- AC*GAUACGUAAUCCGUGAAUCAUCGAAUCUUGAAUCAUCGAAUC*U
- Length
- 45 nucleotides
- Bulged bases
- 4V6I|1|DB|U|60, 4V6I|1|DB|C|62, 4V6I|1|DB|U|82, 4V6I|1|DB|C|83, 4V6I|1|DB|C|84, 4V6I|1|DB|G|85, 4V6I|1|DB|U|86, 4V6I|1|DB|U|90, 4V6I|1|DB|C|94, 4V6I|1|DB|U|86, 4V6I|1|DB|U|90, 4V6I|1|DB|C|94
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V6I|1|DB|A|44
4V6I|1|DB|C|45
*
4V6I|1|DB|G|58
4V6I|1|DB|A|59
4V6I|1|DB|U|60
4V6I|1|DB|A|61
4V6I|1|DB|C|62
4V6I|1|DB|G|63
4V6I|1|DB|U|64
4V6I|1|DB|A|65
4V6I|1|DB|A|66
4V6I|1|DB|U|82
4V6I|1|DB|C|83
4V6I|1|DB|C|84
4V6I|1|DB|G|85
4V6I|1|DB|U|86
4V6I|1|DB|G|87
4V6I|1|DB|A|88
4V6I|1|DB|A|89
4V6I|1|DB|U|90
4V6I|1|DB|C|91
4V6I|1|DB|A|92
4V6I|1|DB|U|93
4V6I|1|DB|C|94
4V6I|1|DB|G|95
4V6I|1|DB|A|96
4V6I|1|DB|A|97
4V6I|1|DB|U|98
4V6I|1|DB|C|99
4V6I|1|DB|U|100
4V6I|1|DB|U|86
4V6I|1|DB|G|87
4V6I|1|DB|A|88
4V6I|1|DB|A|89
4V6I|1|DB|U|90
4V6I|1|DB|C|91
4V6I|1|DB|A|92
4V6I|1|DB|U|93
4V6I|1|DB|C|94
4V6I|1|DB|G|95
4V6I|1|DB|A|96
4V6I|1|DB|A|97
4V6I|1|DB|U|98
4V6I|1|DB|C|99
*
4V6I|1|DB|U|100
Current chains
- Chain DB
- 5.8S rRNA
Nearby chains
- Chain BX
- 60S ribosomal protein rpL25 (L23p)
- Chain BY
- 60S ribosomal protein rpL26 (L24p)
- Chain Bc
- 60S ribosomal protein rpL35 (L29p)
- Chain Bl
- 60S ribosomal protein rpL37 (L37e)
- Chain Bo
- 60S ribosomal protein rpL39 (L39e)
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: