IL_4V6I_210

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

UAUUUAUUAGAUAAAAAAUCAA*UCGGACUCUUUGAUGAUUCAUAA

Length

45 nucleotides

Bulged bases

4V6I|1|CA|A|206, 4V6I|1|CA|U|208, 4V6I|1|CA|U|209, 4V6I|1|CA|A|210, 4V6I|1|CA|U|211, 4V6I|1|CA|U|212, 4V6I|1|CA|C|237, 4V6I|1|CA|U|238, 4V6I|1|CA|C|239, 4V6I|1|CA|U|240, 4V6I|1|CA|U|241, 4V6I|1|CA|U|242, 4V6I|1|CA|G|243, 4V6I|1|CA|A|244, 4V6I|1|CA|U|245, 4V6I|1|CA|G|246, 4V6I|1|CA|A|247, 4V6I|1|CA|U|248, 4V6I|1|CA|U|249, 4V6I|1|CA|C|250, 4V6I|1|CA|A|251

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6I|1|CA|U|205
4V6I|1|CA|A|206
4V6I|1|CA|U|207
4V6I|1|CA|U|208
4V6I|1|CA|U|209
4V6I|1|CA|A|210
4V6I|1|CA|U|211
4V6I|1|CA|U|212
4V6I|1|CA|A|213
4V6I|1|CA|G|214
4V6I|1|CA|A|215
4V6I|1|CA|U|216
4V6I|1|CA|A|217
4V6I|1|CA|A|218
4V6I|1|CA|A|219
4V6I|1|CA|A|220
4V6I|1|CA|A|221
4V6I|1|CA|A|222
4V6I|1|CA|U|223
4V6I|1|CA|C|224
4V6I|1|CA|A|225
4V6I|1|CA|A|226
*
4V6I|1|CA|U|232
4V6I|1|CA|C|233
4V6I|1|CA|G|234
4V6I|1|CA|G|235
4V6I|1|CA|A|236
4V6I|1|CA|C|237
4V6I|1|CA|U|238
4V6I|1|CA|C|239
4V6I|1|CA|U|240
4V6I|1|CA|U|241
4V6I|1|CA|U|242
4V6I|1|CA|G|243
4V6I|1|CA|A|244
4V6I|1|CA|U|245
4V6I|1|CA|G|246
4V6I|1|CA|A|247
4V6I|1|CA|U|248
4V6I|1|CA|U|249
4V6I|1|CA|C|250
4V6I|1|CA|A|251
4V6I|1|CA|U|252
4V6I|1|CA|A|253
4V6I|1|CA|A|254

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AD

40S ribosomal protein rpS4 (S4e)

Chain AP

40S ribosomal protein rpS11 (S17p)

Chain Ab

Unknown 40S ribosomal protein XS1