IL_4V6I_213
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- UCGUAG*UCAAGA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6I_213 not in the Motif Atlas
- Geometric match to IL_3LQX_002
- Geometric discrepancy: 0.3563
- The information below is about IL_3LQX_002
- Detailed Annotation
- tSH-tHW-tHS-cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_35186.1
- Basepair signature
- cWW-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V6I|1|CA|U|626
4V6I|1|CA|C|627
4V6I|1|CA|G|628
4V6I|1|CA|U|629
4V6I|1|CA|A|630
4V6I|1|CA|G|631
*
4V6I|1|CA|U|968
4V6I|1|CA|C|969
4V6I|1|CA|A|970
4V6I|1|CA|A|971
4V6I|1|CA|G|972
4V6I|1|CA|A|973
Current chains
- Chain CA
- 18S rRNA
Nearby chains
- Chain AL
- 40S ribosomal protein rpS23 (S12p)
- Chain AO
- 40S ribosomal protein rpS13 (S15p)
- Chain AP
- 40S ribosomal protein rpS11 (S17p)
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: