IL_4V6I_214

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GUUGGCCGGUCCG*UACUGGAUUUCC

Length

25 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6I|1|CA|G|648
4V6I|1|CA|U|649
4V6I|1|CA|U|650
4V6I|1|CA|G|651
4V6I|1|CA|G|652
4V6I|1|CA|C|653
4V6I|1|CA|C|654
4V6I|1|CA|G|655
4V6I|1|CA|G|656
4V6I|1|CA|U|657
4V6I|1|CA|C|658
4V6I|1|CA|C|659
4V6I|1|CA|G|660
*
4V6I|1|CA|U|672
4V6I|1|CA|A|673
4V6I|1|CA|C|674
4V6I|1|CA|U|675
4V6I|1|CA|G|676
4V6I|1|CA|G|677
4V6I|1|CA|A|678
4V6I|1|CA|U|679
4V6I|1|CA|U|680
4V6I|1|CA|U|681
4V6I|1|CA|C|682
4V6I|1|CA|C|683

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AC

40S ribosomal protein rpS9 (S4p)

Chain AD

40S ribosomal protein rpS4 (S4e)

Chain AH

40S ribosomal protein rpS22 (S8p)

Chain AP

40S ribosomal protein rpS11 (S17p)