3D structure

PDB id
4V6I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
8.8 Å

Loop

Sequence
AUCA*UAACUACUGCGAAAGCAUUU
Length
24 nucleotides
Bulged bases
4V6I|1|CA|C|934
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V6I|1|CA|A|881
4V6I|1|CA|U|882
4V6I|1|CA|C|883
4V6I|1|CA|A|884
*
4V6I|1|CA|U|928
4V6I|1|CA|A|929
4V6I|1|CA|A|930
4V6I|1|CA|C|931
4V6I|1|CA|U|932
4V6I|1|CA|A|933
4V6I|1|CA|C|934
4V6I|1|CA|U|935
4V6I|1|CA|G|936
4V6I|1|CA|C|937
4V6I|1|CA|G|938
4V6I|1|CA|A|939
4V6I|1|CA|A|940
4V6I|1|CA|A|941
4V6I|1|CA|G|942
4V6I|1|CA|C|943
4V6I|1|CA|A|944
4V6I|1|CA|U|945
4V6I|1|CA|U|946
4V6I|1|CA|U|947

Current chains

Chain CA
18S rRNA

Nearby chains

Chain AK
40S ribosomal protein rpS14 (S11p)
Chain AO
40S ribosomal protein rpS13 (S15p)
Chain AT
40S ribosomal protein rpS21 (S21e)
Chain AW
40S ribosomal protein rpS26 (S26e)
Chain BB
60S ribosomal protein rpL2 (L2p)
Chain Bm
60S ribosomal protein rpL43 (L37ae)

Coloring options:

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