IL_4V6I_217

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GGGGAUC*GUCU

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6I|1|CA|G|984
4V6I|1|CA|G|985
4V6I|1|CA|G|986
4V6I|1|CA|G|987
4V6I|1|CA|A|988
4V6I|1|CA|U|989
4V6I|1|CA|C|990
*
4V6I|1|CA|G|1014
4V6I|1|CA|U|1015
4V6I|1|CA|C|1016
4V6I|1|CA|U|1017

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AK

40S ribosomal protein rpS14 (S11p)

Chain AO

40S ribosomal protein rpS13 (S15p)

Chain BB

60S ribosomal protein rpL2 (L2p)

Chain Bm

60S ribosomal protein rpL43 (L37ae)

Chain DA

Large subunit ribosomal RNA; LSU rRNA