IL_4V6I_218

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

CGA*UCUUUGG

Length

10 nucleotides

Bulged bases

4V6I|1|CA|U|1097, 4V6I|1|CA|U|1098, 4V6I|1|CA|U|1099, 4V6I|1|CA|G|1100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6I|1|CA|C|1034
4V6I|1|CA|G|1035
4V6I|1|CA|A|1036
*
4V6I|1|CA|U|1095
4V6I|1|CA|C|1096
4V6I|1|CA|U|1097
4V6I|1|CA|U|1098
4V6I|1|CA|U|1099
4V6I|1|CA|G|1100
4V6I|1|CA|G|1101

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AE

40S ribosomal protein rpS2 (S5p)

Chain AH

40S ribosomal protein rpS22 (S8p)

Chain AL

40S ribosomal protein rpS23 (S12p)