IL_4V6I_219

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_219 not in the Motif Atlas

Geometric match to IL_4LFB_041

Geometric discrepancy: 0.2241

The information below is about IL_4LFB_041

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

4V6I|1|CA|G|1053
4V6I|1|CA|U|1054
4V6I|1|CA|U|1055
*
4V6I|1|CA|A|1065
4V6I|1|CA|C|1066

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AT

40S ribosomal protein rpS21 (S21e)

Chain AW

40S ribosomal protein rpS26 (S26e)