IL_4V6I_222

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GGA*UU

Length

5 nucleotides

Bulged bases

4V6I|1|CA|G|1150

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_222 not in the Motif Atlas

Homologous match to IL_8P9A_430

Geometric discrepancy: 0.4067

The information below is about IL_8P9A_430

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

4V6I|1|CA|G|1149
4V6I|1|CA|G|1150
4V6I|1|CA|A|1151
*
4V6I|1|CA|U|1627
4V6I|1|CA|U|1628

Current chains

Chain CA

18S rRNA

Nearby chains

Chain CC

MRNA, RNA (5'-R(P*AP*AP*AP*AP*GP*AP*CP*UP*UP*CP*A)-3')