IL_4V6I_227

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

UG*UGUCUGCUUAAUUGCGAUAA

Length

22 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6I|1|CA|U|1293
4V6I|1|CA|G|1294
*
4V6I|1|CA|U|1303
4V6I|1|CA|G|1304
4V6I|1|CA|U|1305
4V6I|1|CA|C|1306
4V6I|1|CA|U|1307
4V6I|1|CA|G|1308
4V6I|1|CA|C|1309
4V6I|1|CA|U|1310
4V6I|1|CA|U|1311
4V6I|1|CA|A|1312
4V6I|1|CA|A|1313
4V6I|1|CA|U|1314
4V6I|1|CA|U|1315
4V6I|1|CA|G|1316
4V6I|1|CA|C|1317
4V6I|1|CA|G|1318
4V6I|1|CA|A|1319
4V6I|1|CA|U|1320
4V6I|1|CA|A|1321
4V6I|1|CA|A|1322

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AA

40S ribosomal protein rpS0 (S2p)

Chain AE

40S ribosomal protein rpS2 (S5p)