IL_4V6I_229
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- AGCCAGCGAGUCUAACCUUGG*UCUUGGUAAUCUUGUGAAACU
- Length
- 42 nucleotides
- Bulged bases
- 4V6I|1|CA|C|1481, 4V6I|1|CA|C|1482, 4V6I|1|CA|A|1483, 4V6I|1|CA|G|1484, 4V6I|1|CA|C|1485, 4V6I|1|CA|G|1486, 4V6I|1|CA|A|1487, 4V6I|1|CA|G|1488, 4V6I|1|CA|U|1489, 4V6I|1|CA|C|1490, 4V6I|1|CA|U|1491, 4V6I|1|CA|A|1492, 4V6I|1|CA|A|1493, 4V6I|1|CA|C|1494, 4V6I|1|CA|G|1512, 4V6I|1|CA|G|1513, 4V6I|1|CA|U|1514, 4V6I|1|CA|A|1515, 4V6I|1|CA|A|1516, 4V6I|1|CA|U|1517, 4V6I|1|CA|C|1518, 4V6I|1|CA|U|1519, 4V6I|1|CA|U|1520, 4V6I|1|CA|G|1521, 4V6I|1|CA|U|1522, 4V6I|1|CA|G|1523, 4V6I|1|CA|A|1524, 4V6I|1|CA|A|1525, 4V6I|1|CA|A|1526, 4V6I|1|CA|C|1527
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V6I|1|CA|A|1479
4V6I|1|CA|G|1480
4V6I|1|CA|C|1481
4V6I|1|CA|C|1482
4V6I|1|CA|A|1483
4V6I|1|CA|G|1484
4V6I|1|CA|C|1485
4V6I|1|CA|G|1486
4V6I|1|CA|A|1487
4V6I|1|CA|G|1488
4V6I|1|CA|U|1489
4V6I|1|CA|C|1490
4V6I|1|CA|U|1491
4V6I|1|CA|A|1492
4V6I|1|CA|A|1493
4V6I|1|CA|C|1494
4V6I|1|CA|C|1495
4V6I|1|CA|U|1496
4V6I|1|CA|U|1497
4V6I|1|CA|G|1498
4V6I|1|CA|G|1499
*
4V6I|1|CA|U|1508
4V6I|1|CA|C|1509
4V6I|1|CA|U|1510
4V6I|1|CA|U|1511
4V6I|1|CA|G|1512
4V6I|1|CA|G|1513
4V6I|1|CA|U|1514
4V6I|1|CA|A|1515
4V6I|1|CA|A|1516
4V6I|1|CA|U|1517
4V6I|1|CA|C|1518
4V6I|1|CA|U|1519
4V6I|1|CA|U|1520
4V6I|1|CA|G|1521
4V6I|1|CA|U|1522
4V6I|1|CA|G|1523
4V6I|1|CA|A|1524
4V6I|1|CA|A|1525
4V6I|1|CA|A|1526
4V6I|1|CA|C|1527
4V6I|1|CA|U|1528
Current chains
- Chain CA
- 18S rRNA
Nearby chains
- Chain AB
- 40S ribosomal protein rpS3 (S3p)
- Chain AF
- 40S ribosomal protein rpS5 (S7p)
- Chain AI
- 40S ribosomal protein rpS16 (S9p)
- Chain AJ
- 40S ribosomal protein rpS20 (S10p)
- Chain AN
- 40S ribosomal protein rpS29 (S14p)
- Chain AR
- 40S ribosomal protein rpS15 (S19p)
- Chain AS
- 40S ribosomal protein rpS19 (S19e)
- Chain AV
- 40S ribosomal protein rpS25 (S25e)
Coloring options: