IL_4V6I_233

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GAC*GU

Length

5 nucleotides

Bulged bases

4V6I|1|DA|A|338

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_233 not in the Motif Atlas

Homologous match to IL_8C3A_014

Geometric discrepancy: 0.3933

The information below is about IL_8C3A_014

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

4V6I|1|DA|G|337
4V6I|1|DA|A|338
4V6I|1|DA|C|339
*
4V6I|1|DB|G|25
4V6I|1|DB|U|26

Current chains

Chain DA

25S rRNA

Chain DB

5.8S rRNA

Nearby chains

Chain BD

60S ribosomal protein rpL4 (L4p)

Chain BY

60S ribosomal protein rpL26 (L24p)

Chain Bl

60S ribosomal protein rpL37 (L37e)