IL_4V6I_235

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GGAUAAAU*GAAUAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6I|1|DA|G|517
4V6I|1|DA|G|518
4V6I|1|DA|A|519
4V6I|1|DA|U|520
4V6I|1|DA|A|521
4V6I|1|DA|A|522
4V6I|1|DA|A|523
4V6I|1|DA|U|524
*
4V6I|1|DA|G|568
4V6I|1|DA|A|569
4V6I|1|DA|A|570
4V6I|1|DA|U|571
4V6I|1|DA|A|572
4V6I|1|DA|C|573

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BD

60S ribosomal protein rpL4 (L4p)

Chain BN

60S ribosomal protein rpL14 (L14e)

Chain BS

60S ribosomal protein rpL20 (L18ae)

Chain Be

60S ribosomal protein rpL7 (L30p)