IL_4V6I_241

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GAGCCCU*GGUGCGCUU

Length

16 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6I|1|DA|G|1666
4V6I|1|DA|A|1667
4V6I|1|DA|G|1668
4V6I|1|DA|C|1669
4V6I|1|DA|C|1670
4V6I|1|DA|C|1671
4V6I|1|DA|U|1672
*
4V6I|1|DA|G|1775
4V6I|1|DA|G|1776
4V6I|1|DA|U|1777
4V6I|1|DA|G|1778
4V6I|1|DA|C|1779
4V6I|1|DA|G|1780
4V6I|1|DA|C|1781
4V6I|1|DA|U|1782
4V6I|1|DA|U|1783

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BT

60S ribosomal protein rpL19 (L19e)

Chain BW

60S ribosomal protein rpL22 (L22e)

Chain Bp

60S ribosomal protein rpL40 (L40e)