IL_4V6I_246

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GACU*GGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_246 not in the Motif Atlas

Geometric match to IL_5EW4_001

Geometric discrepancy: 0.2373

The information below is about IL_5EW4_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_43644.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

2

Unit IDs

4V6I|1|DA|G|1994
4V6I|1|DA|A|1995
4V6I|1|DA|C|1996
4V6I|1|DA|U|1997
*
4V6I|1|DA|G|2024
4V6I|1|DA|G|2025
4V6I|1|DA|A|2026
4V6I|1|DA|C|2027

Current chains

Chain DA

25S rRNA

Nearby chains

Chain Ba

60S ribosomal protein rpL27 (L27e)