IL_4V6I_247

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

CU*GAG

Length

5 nucleotides

Bulged bases

4V6I|1|DA|A|2324

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_247 not in the Motif Atlas

Homologous match to IL_8P9A_310

Geometric discrepancy: 0.1694

The information below is about IL_8P9A_310

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

4V6I|1|DA|C|2128
4V6I|1|DA|U|2129
*
4V6I|1|DA|G|2323
4V6I|1|DA|A|2324
4V6I|1|DA|G|2325

Current chains

Chain DA

25S rRNA

Nearby chains

Chain Ac

Unknown 40S ribosomal protein XS2

Chain Bm

60S ribosomal protein rpL43 (L37ae)