IL_4V6I_249

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

AUGAAGC*GGGU

Length

11 nucleotides

Bulged bases

4V6I|1|DA|U|2521, 4V6I|1|DA|G|2522, 4V6I|1|DA|A|2523, 4V6I|1|DA|A|2524, 4V6I|1|DA|G|2525, 4V6I|1|DA|G|2585, 4V6I|1|DA|G|2586

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6I|1|DA|A|2520
4V6I|1|DA|U|2521
4V6I|1|DA|G|2522
4V6I|1|DA|A|2523
4V6I|1|DA|A|2524
4V6I|1|DA|G|2525
4V6I|1|DA|C|2526
*
4V6I|1|DA|G|2584
4V6I|1|DA|G|2585
4V6I|1|DA|G|2586
4V6I|1|DA|U|2587

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BB

60S ribosomal protein rpL2 (L2p)

Chain BH

60S ribosomal protein rpL8 (L7ae)

Chain BX

60S ribosomal protein rpL25 (L23p)

Chain DB

5.8S ribosomal RNA; 5.8S rRNA