IL_4V6K_001

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

CG*UAG

Length

5 nucleotides

Bulged bases

4V6K|1|AA|A|66

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6K_001 not in the Motif Atlas

Homologous match to IL_4WF9_112

Geometric discrepancy: 0.3453

The information below is about IL_4WF9_112

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

4V6K|1|AA|C|17
4V6K|1|AA|G|18
*
4V6K|1|AA|U|65
4V6K|1|AA|A|66
4V6K|1|AA|G|67

Current chains

Chain AA

ribosomal RNA 5S

Nearby chains