IL_4V6K_004
3D structure
- PDB id
- 4V6K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural insights into cognate vs. near-cognate discrimination during decoding.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.25 Å
Loop
- Sequence
- ACCCC*GAACU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6K_004 not in the Motif Atlas
- Homologous match to IL_4V9F_104
- Geometric discrepancy: 0.3766
- The information below is about IL_4V9F_104
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.12
- Basepair signature
- cWW-cSH-cWS-L-tSW-R-R-cWW
- Number of instances in this motif group
- 12
Unit IDs
4V6K|1|AA|A|34
4V6K|1|AA|C|35
4V6K|1|AA|C|36
4V6K|1|AA|C|37
4V6K|1|AA|C|38
*
4V6K|1|AA|G|44
4V6K|1|AA|A|45
4V6K|1|AA|A|46
4V6K|1|AA|C|47
4V6K|1|AA|U|48
Current chains
- Chain AA
- ribosomal RNA 5S
Nearby chains
- Chain AB
- Large subunit ribosomal RNA; LSU rRNA
- Chain AG
- 50S ribosomal protein L5
- Chain AP
- 50S ribosomal protein L18
- Chain Ab
- 50S ribosomal protein L31
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