IL_4V6K_005

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

CGAUGGUAG*CGAGAGUAG

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6K_005 not in the Motif Atlas

Homologous match to IL_7RQB_115

Geometric discrepancy: 0.1724

The information below is about IL_7RQB_115

Detailed Annotation

Bacterial 5S Loop E

Broad Annotation

Loop E

Motif group

IL_56455.3

Basepair signature

cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V6K|1|AA|C|71
4V6K|1|AA|G|72
4V6K|1|AA|A|73
4V6K|1|AA|U|74
4V6K|1|AA|G|75
4V6K|1|AA|G|76
4V6K|1|AA|U|77
4V6K|1|AA|A|78
4V6K|1|AA|G|79
*
4V6K|1|AA|C|97
4V6K|1|AA|G|98
4V6K|1|AA|A|99
4V6K|1|AA|G|100
4V6K|1|AA|A|101
4V6K|1|AA|G|102
4V6K|1|AA|U|103
4V6K|1|AA|A|104
4V6K|1|AA|G|105

Current chains

Chain AA

ribosomal RNA 5S

Nearby chains

Chain AB

Large subunit ribosomal RNA; LSU rRNA

Chain AN

50S ribosomal protein L16

Chain AW

50S ribosomal protein L25