IL_4V6K_007

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

4V6K|1|AB|A|443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6K_007 not in the Motif Atlas

Homologous match to IL_7RQB_002

Geometric discrepancy: 0.2944

The information below is about IL_7RQB_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

4V6K|1|AB|G|36
4V6K|1|AB|C|37
*
4V6K|1|AB|G|442
4V6K|1|AB|A|443
4V6K|1|AB|C|444

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AF

50S ribosomal protein L4

Chain AR

50S ribosomal protein L20