IL_4V6K_011

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6K_011 not in the Motif Atlas

Homologous match to IL_7RQB_006

Geometric discrepancy: 0.1519

The information below is about IL_7RQB_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V6K|1|AB|G|188
4V6K|1|AB|G|189
4V6K|1|AB|A|190
4V6K|1|AB|A|191
4V6K|1|AB|C|192
4V6K|1|AB|U|193
4V6K|1|AB|G|194
*
4V6K|1|AB|C|201
4V6K|1|AB|U|202
4V6K|1|AB|A|203
4V6K|1|AB|A|204
4V6K|1|AB|G|205
4V6K|1|AB|U|206
4V6K|1|AB|A|207
4V6K|1|AB|C|208

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AM

50S ribosomal protein L15

Chain AY

50S ribosomal protein L28