IL_4V6K_031

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

UUU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6K_031 not in the Motif Atlas

Homologous match to IL_7RQB_030

Geometric discrepancy: 0.4286

The information below is about IL_7RQB_030

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

4V6K|1|AB|U|870
4V6K|1|AB|U|871
4V6K|1|AB|U|872
*
4V6K|1|AB|A|905
4V6K|1|AB|U|906
4V6K|1|AB|G|907

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AN

50S ribosomal protein L16