IL_4V6K_074

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6K_074 not in the Motif Atlas

Homologous match to IL_5J7L_317

Geometric discrepancy: 0.2656

The information below is about IL_5J7L_317

Detailed Annotation

UAA/GAN related

Broad Annotation

No text annotation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

4V6K|1|AB|U|1864
4V6K|1|AB|U|1865
4V6K|1|AB|A|1866
4V6K|1|AB|G|1867
*
4V6K|1|AB|C|1874
4V6K|1|AB|G|1875
4V6K|1|AB|A|1876
4V6K|1|AB|A|1877
4V6K|1|AB|G|1878

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AC

50S ribosomal protein L1