IL_4V6K_078

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

4V6K|1|AB|C|2055, 4V6K|1|AB|U|2613

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6K_078 not in the Motif Atlas

Homologous match to IL_5J7L_321

Geometric discrepancy: 0.2448

The information below is about IL_5J7L_321

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V6K|1|AB|A|2054
4V6K|1|AB|C|2055
4V6K|1|AB|G|2056
*
4V6K|1|AB|C|2612
4V6K|1|AB|U|2613
4V6K|1|AB|A|2614
4V6K|1|AB|U|2615

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AE

50S ribosomal protein L3

Chain AT

50S ribosomal protein L22

Chain Ac

50S ribosomal protein L32